If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ), 'gf_id' => 'HOM05D000800', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000800' ), 'data_identifier' => 'HOM05D000800', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000800', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '739', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia09311' => 'ach', 'Actinidia17231' => 'ach', 'Actinidia22795' => 'ach', 'Actinidia27637' => 'ach', 'Actinidia28529' => 'ach', 'Actinidia28530' => 'ach', 'Ah.04g151500' => 'amhyb', 'Ah.04g151510' => 'amhyb', 'Ah.04g151520' => 'amhyb', 'Ah.04g151530' => 'amhyb', 'Ah.04g154840' => 'amhyb', 'Ah.13g076550' => 'amhyb', 'Ah.13g076570' => 'amhyb', 'Ah.13g076580' => 'amhyb', 'Aqoxy1G00304' => 'aox', 'Aqoxy1G00305' => 'aox', 'Aqoxy1G00307' => 'aox', 'Aqoxy2G00228' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BDKN1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P44SU2' => 'arhy', 'ATR0329G011' => 'atr', 'ATR0787G002' => 'atr', 'ATR0787G054' => 'atr', 'ATR0787G141' => 'atr', 'ATR0787G160' => 'atr', 'ATR0787G161' => 'atr', 'ATR0787G182' => 'atr', 'ATR0787G225' => 'atr', 'Atru.chr1.1144' => 'acertr', 'AUR62006116' => 'cqu', 'AUR62019373' => 'cqu', 'AUR62024481' => 'cqu', 'AUR62024482' => 'cqu', 'AUR62024483' => 'cqu', 'AUR62024484' => 'cqu', 'AUR62024485' => 'cqu', 'AUR62024488' => 'cqu', 'AUR62024489' => 'cqu', 'AUR62024490' => 'cqu', 'AUR62024491' => 'cqu', 'AUR62024492' => 'cqu', 'AUR62024493' => 'cqu', 'AUR62024495' => 'cqu', 'AUR62024496' => 'cqu', 'AUR62024497' => 'cqu', 'AUR62026067' => 'cqu', 'AUR62026068' => 'cqu', 'AUR62026069' => 'cqu', 'AUR62026070' => 'cqu', 'AUR62026073' => 'cqu', 'AUR62026074' => 'cqu', 'AUR62026075' => 'cqu', 'AUR62026076' => 'cqu', 'AUR62026077' => 'cqu', 'AUR62026078' => 'cqu', 'AUR62026079' => 'cqu', 'AUR62026080' => 'cqu', 'AUR62026081' => 'cqu', 'AUR62026082' => 'cqu', 'AUR62026100' => 'cqu', 'AUR62026101' => 'cqu', 'AUR62036704' => 'cqu', 'CAN.G107.22' => 'can', 'CAN.G107.23' => 'can', 'CAN.G107.24' => 'can', 'CAN.G1340.17' => 'can', 'CAN.G186.73' => 'can', 'CAN.G2245.1' => 'can', 'CAN.G274.26' => 'can', 'CAN.G274.27' => 'can', 'CAN.G475.5' => 'can', 'CAN.G551.50' => 'can', 'CAN.G551.53' => 'can', 'CAN.G551.54' => 'can', 'CAN.G551.55' => 'can', 'CAN.G551.57' => 'can', 'CAN.G551.58' => 'can', 'CAN.G551.60' => 'can', 'CAN.G551.61' => 'can', 'CAN.G551.62' => 'can', 'CAN.G551.63' => 'can', 'CAN.G551.64' => 'can', 'CAN.G624.29' => 'can', 'CAN.G624.30' => 'can', 'CAN.G624.31' => 'can', 'CAN.G641.24' => 'can', 'CAN.G641.25' => 'can', 'CAN.G676.14' => 'can', 'CAN.G676.15' => 'can', 'CAN.G676.16' => 'can', 'CAN.G676.17' => 'can', 'CANSAT54G0586' => 'cansat', 'CANSAT56G2876' => 'cansat', 'CANSAT78G1206' => 'cansat', 'CANSAT78G2115' => 'cansat', 'CANSAT80G0161' => 'cansat', 'CANSAT80G0180' => 'cansat', 'CANSAT80G0317' => 'cansat', 'CANSAT80G0644' => 'cansat', 'CANSAT80G0960' => 'cansat', 'CANSAT80G1150' => 'cansat', 'CANSAT80G1571' => 'cansat', 'CANSAT80G1647' => 'cansat', 'CANSAT80G1838' => 'cansat', 'CANSAT80G1847' => 'cansat', 'CANSAT80G2418' => 'cansat', 'CANSAT80G2546' => 'cansat', 'CANSAT80G2650' => 'cansat', 'CANSAT80G2733' => 'cansat', 'Ca_12236_v3' => 'car', 'Cc00_g00010' => 'ccan', 'Cc06_g17770' => 'ccan', 'Cc06_g17780' => 'ccan', 'Cc06_g17790' => 'ccan', 'Cc06_g17800' => 'ccan', 'Cc06_g17810' => 'ccan', 'Cc06_g17820' => 'ccan', 'Cc06_g17830' => 'ccan', 'Cc06_g17840' => 'ccan', 'Cc06_g17850' => 'ccan', 'Cfa016790' => 'cfa', 'Ciclev10004886m.g' => 'ccl', 'Ciclev10005382m.g' => 'ccl', 'CiPaw.10G034800' => 'cil', 'CiPaw.10G035000' => 'cil', 'ClCG04G003570' => 'cla', 'ClCG04G003580' => 'cla', 'ClCG04G003610' => 'cla', 'ClCG04G003620' => 'cla', 'COL.COLO4_30163' => 'col', 'Cpa.g.sc182.5' => 'cpa', 'CsaV3_4G028910' => 'csa', 'CsaV3_4G028950' => 'csa', 'CsaV3_4G028960' => 'csa', 'CSS0002451' => 'camsi', 'CSS0002539' => 'camsi', 'CSS0009586' => 'camsi', 'CSS0010900' => 'camsi', 'CSS0011526' => 'camsi', 'CSS0019374' => 'camsi', 'CSS0019832' => 'camsi', 'CSS0020451' => 'camsi', 'CSS0021469' => 'camsi', 'CSS0027523' => 'camsi', 'CSS0028317' => 'camsi', 'CSS0031056' => 'camsi', 'CSS0037130' => 'camsi', 'CSS0037555' => 'camsi', 'CSS0038690' => 'camsi', 'CSS0042538' => 'camsi', 'CSS0048325' => 'camsi', 'DCAR_003085' => 'dca', 'DCAR_006222' => 'dca', 'DCAR_009752' => 'dca', 'DCAR_013608' => 'dca', 'DCAR_013609' => 'dca', 'DCAR_013610' => 'dca', 'DCAR_016977' => 'dca', 'DCAR_016978' => 'dca', 'DCAR_016979' => 'dca', 'DCAR_016980' => 'dca', 'DCAR_016981' => 'dca', 'DCAR_016982' => 'dca', 'DCAR_019018' => 'dca', 'DCAR_019019' => 'dca', 'DCAR_020502' => 'dca', 'DCAR_020504' => 'dca', 'DCAR_021491' => 'dca', 'DCAR_025266' => 'dca', 'DCAR_027834' => 'dca', 'Dinv02798' => 'din', 'Dinv05586' => 'din', 'Dinv12409' => 'din', 'Dinv21308' => 'din', 'Dinv39649' => 'din', 'Dinv44583' => 'din', 'Duzib093G0372' => 'dzi', 'Duzib093G0862' => 'dzi', 'ECA236G1657' => 'eca', 'ECA247G0740' => 'eca', 'ECA247G0986' => 'eca', 'ECA247G2051' => 'eca', 'ECA248G1101' => 'eca', 'ECA248G1161' => 'eca', 'ECA248G2331' => 'eca', 'ECA248G3597' => 'eca', 'EL10Ac3g05307' => 'bvu', 'EL10Ac3g07115' => 'bvu', 'EL10Ac3g07116' => 'bvu', 'EL10Ac3g07117' => 'bvu', 'EL10Ac3g07123' => 'bvu', 'EL10Ac3g07126' => 'bvu', 'EL10Ac3g07127' => 'bvu', 'EL10Ac3g07128' => 'bvu', 'EL10As19g24183' => 'bvu', 'Eucgr.A02308' => 'egr', 'Eucgr.A02314' => 'egr', 'Eucgr.A02318' => 'egr', 'Eucgr.A02320' => 'egr', 'Eucgr.A02321' => 'egr', 'Eucgr.A02323' => 'egr', 'Eucgr.A02326' => 'egr', 'Eucgr.A02328' => 'egr', 'Eucgr.A02329' => 'egr', 'Eucgr.A02330' => 'egr', 'Eucgr.B02735' => 'egr', 'FAN02G1617' => 'fan', 'FAN09G4782' => 'fan', 'FvH4_6g24360' => 'fve', 'Glyma.02G184200' => 'gma', 'Glyma.02G186000' => 'gma', 'Glyma.03G134500' => 'gma', 'Glyma.10G107900' => 'gma', 'Glyma.10G108400' => 'gma', 'Glyma.19G136700' => 'gma', 'Gohir.A01G194100' => 'ghi', 'Gohir.D01G184400' => 'ghi', 'Gorai.002G227900' => 'gra', 'GSVIVG01033243001' => 'vvi', 'HanXRQChr01g0008691' => 'han', 'HanXRQChr01g0008701' => 'han', 'HanXRQChr01g0008711' => 'han', 'HanXRQChr01g0008861' => 'han', 'HanXRQChr01g0008891' => 'han', 'HanXRQChr08g0218561' => 'han', 'HanXRQChr10g0283371' => 'han', 'HanXRQChr10g0283391' => 'han', 'HanXRQChr10g0297901' => 'han', 'HanXRQChr10g0297911' => 'han', 'HanXRQChr13g0393311' => 'han', 'HanXRQChr13g0393321' => 'han', 'HanXRQChr13g0393331' => 'han', 'HanXRQChr14g0428821' => 'han', 'HanXRQChr16g0526691' => 'han', 'Haze_19812' => 'cav', 'Haze_19815' => 'cav', 'Hma1.2p1_0110F.1_g052730' => 'hma', 'Hma1.2p1_0110F.1_g052750' => 'hma', 'Hma1.2p1_0110F.1_g052770' => 'hma', 'Hma1.2p1_0545F.1_g175870' => 'hma', 'Hma1.2p1_0788F.1_g218010' => 'hma', 'Hma1.2p1_1010F.1_g247450' => 'hma', 'Hma1.2p1_1279F.1_g272480' => 'hma', 'Hma1.2p1_1279F.1_g272485' => 'hma', 'HPP92_002381' => 'vpl', 'HPP92_002396' => 'vpl', 'HPP92_004992' => 'vpl', 'HPP92_004993' => 'vpl', 'HPP92_004995' => 'vpl', 'HPP92_004996' => 'vpl', 'HPP92_004997' => 'vpl', 'HPP92_004999' => 'vpl', 'HPP92_005000' => 'vpl', 'HPP92_005002' => 'vpl', 'HPP92_005003' => 'vpl', 'HPP92_005004' => 'vpl', 'HPP92_026754' => 'vpl', 'HPP92_027609' => 'vpl', 'Hund19141' => 'sun', 'Hund24676' => 'sun', 'Lalb_Chr06g0173471' => 'lal', 'Lalb_Chr06g0173481' => 'lal', 'Lalb_Chr20g0110631' => 'lal', 'Lalb_Chr21g0316541' => 'lal', 'Lalb_Chr21g0316551' => 'lal', 'Lalb_Chr25g0287271' => 'lal', 'Lj1A1128T59' => 'lonja', 'Lj1A1129T67' => 'lonja', 'Lj1A1131T36' => 'lonja', 'Lj1C1127G4' => 'lonja', 'Lj1C1127T4' => 'lonja', 'Lj1C1127T5' => 'lonja', 'Lj1C1129G11' => 'lonja', 'Lj1C1129G14' => 'lonja', 'Lj1C1129T11' => 'lonja', 'Lj1C1129T12' => 'lonja', 'Lj1C1129T13' => 'lonja', 'Lj1C1129T6' => 'lonja', 'Lj1C1129T7' => 'lonja', 'Lj1g0001393' => 'lja', 'Lj1g0007448' => 'lja', 'Lj1g0013703' => 'lja', 'Lj1g0014612' => 'lja', 'Lj1g0015168' => 'lja', 'Lj1g0015209' => 'lja', 'Lj1g0018041' => 'lja', 'Lj1P1127T11' => 'lonja', 'Lj2P386T45' => 'lonja', 'Lj4g0003906' => 'lja', 'Lj5C562T0' => 'lonja', 'Lj5C565G2' => 'lonja', 'Lj5C567T1' => 'lonja', 'Lj5C567T2' => 'lonja', 'Lj5P559T17' => 'lonja', 'Lj5P561T7' => 'lonja', 'Lj5P563T13' => 'lonja', 'Lj5P565T11' => 'lonja', 'Lj5P567T16' => 'lonja', 'Lj5P567T46' => 'lonja', 'LjContig00272g0002292' => 'lja', 'LjContig00272g0024265' => 'lja', 'LjContig00503g0018580' => 'lja', 'Lju124C46T6' => 'lonja', 'Lju124C46T7' => 'lonja', 'Lju124C47G15' => 'lonja', 'Lju124C47T10' => 'lonja', 'Lju124C47T24' => 'lonja', 'Lju124C47T9' => 'lonja', 'Lju124P46T72' => 'lonja', 'Lsat_1_v5_gn_1_113301' => 'lsa', 'Lsat_1_v5_gn_1_114441' => 'lsa', 'Lsat_1_v5_gn_5_147980' => 'lsa', 'Lsat_1_v5_gn_5_160161' => 'lsa', 'Lsat_1_v5_gn_5_160181' => 'lsa', 'Lsat_1_v5_gn_5_160601' => 'lsa', 'Lsat_1_v5_gn_5_162041' => 'lsa', 'Lsat_1_v5_gn_5_162100' => 'lsa', 'Lsat_1_v5_gn_8_20741' => 'lsa', 'Lsat_1_v5_gn_8_80941' => 'lsa', 'Lsat_1_v5_gn_9_30861' => 'lsa', 'Lsat_1_v5_gn_9_30880' => 'lsa', 'Manes.08G052700' => 'mes', 'Manes.09G018300' => 'mes', 'MBI11_g20192_MAGBIO' => 'mbi', 'MBI11_g20193_MAGBIO' => 'mbi', 'MBI11_g42240_MAGBIO' => 'mbi', 'MD08G1134000' => 'mdo', 'MD14G1076500' => 'mdo', 'Medtr1g029540' => 'mtr', 'Medtr4g008630' => 'mtr', 'Medtr8g090095' => 'mtr', 'MELO3C019171.2' => 'cme', 'MELO3C019177.2' => 'cme', 'MELO3C019186.2' => 'cme', 'Migut.B00972' => 'egut', 'Migut.J01733' => 'egut', 'Migut.J01734' => 'egut', 'Migut.J01736' => 'egut', 'Migut.J01737' => 'egut', 'Migut.J01738' => 'egut', 'Migut.K00096' => 'egut', 'Migut.K00097' => 'egut', 'Migut.K00099' => 'egut', 'Migut.K00100' => 'egut', 'MSTRG.19845' => 'ama', 'MSTRG.19846' => 'ama', 'MSTRG.19847' => 'ama', 'MSTRG.19850' => 'ama', 'MSTRG.6413' => 'ama', 'Nitab4.5_0000059g0590' => 'nta', 'Nitab4.5_0000082g0170' => 'nta', 'Nitab4.5_0000082g0180' => 'nta', 'Nitab4.5_0000082g0200' => 'nta', 'Nitab4.5_0000082g0210' => 'nta', 'Nitab4.5_0000170g0470' => 'nta', 'Nitab4.5_0000191g0180' => 'nta', 'Nitab4.5_0000227g0230' => 'nta', 'Nitab4.5_0000234g0270' => 'nta', 'Nitab4.5_0000244g0300' => 'nta', 'Nitab4.5_0000244g0310' => 'nta', 'Nitab4.5_0000364g0030' => 'nta', 'Nitab4.5_0000442g0150' => 'nta', 'Nitab4.5_0000562g0080' => 'nta', 'Nitab4.5_0000636g0070' => 'nta', 'Nitab4.5_0000636g0120' => 'nta', 'Nitab4.5_0000636g0130' => 'nta', 'Nitab4.5_0000636g0150' => 'nta', 'Nitab4.5_0000755g0250' => 'nta', 'Nitab4.5_0000826g0270' => 'nta', 'Nitab4.5_0000826g0290' => 'nta', 'Nitab4.5_0000826g0310' => 'nta', 'Nitab4.5_0000937g0050' => 'nta', 'Nitab4.5_0001073g0010' => 'nta', 'Nitab4.5_0001216g0020' => 'nta', 'Nitab4.5_0001372g0010' => 'nta', 'Nitab4.5_0001550g0080' => 'nta', 'Nitab4.5_0001598g0040' => 'nta', 'Nitab4.5_0001598g0050' => 'nta', 'Nitab4.5_0001604g0060' => 'nta', 'Nitab4.5_0001879g0100' => 'nta', 'Nitab4.5_0002002g0140' => 'nta', 'Nitab4.5_0002039g0060' => 'nta', 'Nitab4.5_0002329g0180' => 'nta', 'Nitab4.5_0002794g0010' => 'nta', 'Nitab4.5_0002794g0020' => 'nta', 'Nitab4.5_0002794g0040' => 'nta', 'Nitab4.5_0002914g0050' => 'nta', 'Nitab4.5_0003296g0020' => 'nta', 'Nitab4.5_0003307g0010' => 'nta', 'Nitab4.5_0003443g0010' => 'nta', 'Nitab4.5_0003443g0020' => 'nta', 'Nitab4.5_0003443g0030' => 'nta', 'Nitab4.5_0003472g0060' => 'nta', 'Nitab4.5_0003546g0090' => 'nta', 'Nitab4.5_0003546g0100' => 'nta', 'Nitab4.5_0003546g0110' => 'nta', 'Nitab4.5_0004232g0040' => 'nta', 'Nitab4.5_0004244g0010' => 'nta', 'Nitab4.5_0004617g0010' => 'nta', 'Nitab4.5_0005716g0020' => 'nta', 'Nitab4.5_0005716g0030' => 'nta', 'Nitab4.5_0006870g0010' => 'nta', 'Nitab4.5_0006870g0030' => 'nta', 'Nitab4.5_0006870g0050' => 'nta', 'Nitab4.5_0006870g0060' => 'nta', 'Nitab4.5_0006870g0070' => 'nta', 'Nitab4.5_0006870g0080' => 'nta', 'Nitab4.5_0006940g0010' => 'nta', 'Nitab4.5_0008310g0050' => 'nta', 'Nitab4.5_0008310g0080' => 'nta', 'Nitab4.5_0010064g0030' => 'nta', 'Nitab4.5_0010064g0050' => 'nta', 'Nitab4.5_0010530g0010' => 'nta', 'Nitab4.5_0011146g0010' => 'nta', 'Nitab4.5_0013419g0010' => 'nta', 'Nitab4.5_0025249g0010' => 'nta', 'Nn2g15152' => 'nnu', 'Nn7g36364' => 'nnu', 'Nn7g36365' => 'nnu', 'Nn7g36367' => 'nnu', 'Oeu008167.1' => 'oeu', 'Oeu008168.1' => 'oeu', 'Oeu008906.1' => 'oeu', 'Oeu008908.1' => 'oeu', 'Oeu012850.1' => 'oeu', 'Oeu017932.1' => 'oeu', 'Oeu017933.1' => 'oeu', 'Oeu017936.1' => 'oeu', 'Oeu017937.1' => 'oeu', 'Oeu017939.1' => 'oeu', 'Oeu023117.1' => 'oeu', 'Oeu023118.1' => 'oeu', 'Oeu023119.1' => 'oeu', 'Oeu026042.1' => 'oeu', 'Oeu033880.1' => 'oeu', 'Oeu035811.1' => 'oeu', 'Os04g0556400' => 'osa', 'Os04g0556500' => 'osa', 'Os04g0556600' => 'osa', 'Os04g0565200' => 'osa', 'Os04g0565400' => 'osa', 'Os07g0660500' => 'osa', 'Peaxi162Scf00002g00284' => 'pax', 'Peaxi162Scf00002g02823' => 'pax', 'Peaxi162Scf00002g02827' => 'pax', 'Peaxi162Scf00002g03214' => 'pax', 'Peaxi162Scf00050g00068' => 'pax', 'Peaxi162Scf00062g00110' => 'pax', 'Peaxi162Scf00062g00133' => 'pax', 'Peaxi162Scf00062g10014' => 'pax', 'Peaxi162Scf00069g00081' => 'pax', 'Peaxi162Scf00069g00091' => 'pax', 'Peaxi162Scf00069g00093' => 'pax', 'Peaxi162Scf00069g00096' => 'pax', 'Peaxi162Scf00109g01520' => 'pax', 'Peaxi162Scf00130g00063' => 'pax', 'Peaxi162Scf00130g00067' => 'pax', 'Peaxi162Scf00130g00071' => 'pax', 'Peaxi162Scf00130g00615' => 'pax', 'Peaxi162Scf00130g00619' => 'pax', 'Peaxi162Scf00130g00620' => 'pax', 'Peaxi162Scf00130g00716' => 'pax', 'Peaxi162Scf00130g00727' => 'pax', 'Peaxi162Scf00150g00072' => 'pax', 'Peaxi162Scf00176g00082' => 'pax', 'Peaxi162Scf00176g00111' => 'pax', 'Peaxi162Scf00185g00071' => 'pax', 'Peaxi162Scf00185g00084' => 'pax', 'Peaxi162Scf00460g00089' => 'pax', 'Peaxi162Scf00460g00612' => 'pax', 'Peaxi162Scf00502g00011' => 'pax', 'Peaxi162Scf00636g00061' => 'pax', 'Peaxi162Scf00677g00035' => 'pax', 'Peaxi162Scf00677g00335' => 'pax', 'Peaxi162Scf00677g00336' => 'pax', 'Peaxi162Scf00757g00036' => 'pax', 'Peaxi162Scf00833g00001' => 'pax', 'Peaxi162Scf00833g00511' => 'pax', 'Peaxi162Scf00898g00011' => 'pax', 'Peaxi162Scf01023g00010' => 'pax', 'Peaxi162Scf01023g00012' => 'pax', 'Peaxi162Scf01023g00110' => 'pax', 'Peaxi162Scf01023g00111' => 'pax', 'Peaxi162Scf01525g00002' => 'pax', 'Peaxi162Scf42952g00001' => 'pax', 'PGR004G1255' => 'pgr', 'PGSC0003DMG400000431' => 'stu', 'PGSC0003DMG400000432' => 'stu', 'PGSC0003DMG400004564' => 'stu', 'PGSC0003DMG400005960' => 'stu', 'PGSC0003DMG400005989' => 'stu', 'PGSC0003DMG400007833' => 'stu', 'PGSC0003DMG400007908' => 'stu', 'PGSC0003DMG400007909' => 'stu', 'PGSC0003DMG400008137' => 'stu', 'PGSC0003DMG400008138' => 'stu', 'PGSC0003DMG400008139' => 'stu', 'PGSC0003DMG400008140' => 'stu', 'PGSC0003DMG400011935' => 'stu', 'PGSC0003DMG400012693' => 'stu', 'PGSC0003DMG400012707' => 'stu', 'PGSC0003DMG400012708' => 'stu', 'PGSC0003DMG400016773' => 'stu', 'PGSC0003DMG400018754' => 'stu', 'PGSC0003DMG400023732' => 'stu', 'PGSC0003DMG400025532' => 'stu', 'PGSC0003DMG400026890' => 'stu', 'PGSC0003DMG400027162' => 'stu', 'PGSC0003DMG400027163' => 'stu', 'PGSC0003DMG400027200' => 'stu', 'PGSC0003DMG400027259' => 'stu', 'PGSC0003DMG400027261' => 'stu', 'PGSC0003DMG400027289' => 'stu', 'PGSC0003DMG400027291' => 'stu', 'PGSC0003DMG400028331' => 'stu', 'PGSC0003DMG400029226' => 'stu', 'PGSC0003DMG400029447' => 'stu', 'PGSC0003DMG400029489' => 'stu', 'PGSC0003DMG400029490' => 'stu', 'PGSC0003DMG400029491' => 'stu', 'PGSC0003DMG400029492' => 'stu', 'PGSC0003DMG400029493' => 'stu', 'PGSC0003DMG400029495' => 'stu', 'PGSC0003DMG400029497' => 'stu', 'PGSC0003DMG400029825' => 'stu', 'PGSC0003DMG400030265' => 'stu', 'PGSC0003DMG400032511' => 'stu', 'PGSC0003DMG400032520' => 'stu', 'PGSC0003DMG400033546' => 'stu', 'PGSC0003DMG400035370' => 'stu', 'PGSC0003DMG400035573' => 'stu', 'PGSC0003DMG400037840' => 'stu', 'PGSC0003DMG400038438' => 'stu', 'PGSC0003DMG400039453' => 'stu', 'PGSC0003DMG400040962' => 'stu', 'PGSC0003DMG400044152' => 'stu', 'PGSC0003DMG401027210' => 'stu', 'PGSC0003DMG401029448' => 'stu', 'PGSC0003DMG401029824' => 'stu', 'PGSC0003DMG401029843' => 'stu', 'PGSC0003DMG402012694' => 'stu', 'PGSC0003DMG402027210' => 'stu', 'PGSC0003DMG402027258' => 'stu', 'PGSC0003DMG402029824' => 'stu', 'PGSC0003DMG403029823' => 'stu', 'Phvul.007G251000' => 'pvu', 'Phvul.007G251100' => 'pvu', 'Phvul.007G251200' => 'pvu', 'Phvul.007G251300' => 'pvu', 'Phvul.008G103900' => 'pvu', 'Phvul.008G158106' => 'pvu', 'Potri.006G047200' => 'ptr', 'Potri.006G048200' => 'ptr', 'Potri.016G057300' => 'ptr', 'Prupe.7G055200' => 'ppe', 'Psat0s4342g0040' => 'psa', 'Psat7g055680' => 'psa', 'PSO063G4098' => 'pso', 'PSO170G3974' => 'pso', 'PSO339G3899' => 'pso', 'PSO384G1819' => 'pso', 'PSO384G3497' => 'pso', 'PSO507G0020' => 'pso', 'PSO832G2943' => 'pso', 'PSO832G3517' => 'pso', 'QL07p002818' => 'qlo', 'QL07p002892' => 'qlo', 'QL07p002901' => 'qlo', 'RcHm_v2.0_Chr3g0483281' => 'rch', 'RcHm_v2.0_Chr3g0483301' => 'rch', 'Rhsim03G0028300' => 'rsi', 'Rhsim04G0103500' => 'rsi', 'Rhsim04G0103800' => 'rsi', 'Rhsim04G0104000' => 'rsi', 'Rhsim04G0104300' => 'rsi', 'Rhsim04G0104400' => 'rsi', 'Rhsim04G0104500' => 'rsi', 'Rhsim04G0104800' => 'rsi', 'Rhsim04G0105000' => 'rsi', 'Rhsim04G0105300' => 'rsi', 'Rhsim04G0105500' => 'rsi', 'Rhsim04G0105900' => 'rsi', 'Rhsim04G0209900' => 'rsi', 'Rhsim09G0032700' => 'rsi', 'Sabra16G0060300' => 'sbr', 'SalBow1G1640' => 'sbo', 'SalBow1G3949' => 'sbo', 'SalBow1G4873' => 'sbo', 'SalBow1G5161' => 'sbo', 'SalBow1G5712' => 'sbo', 'SalBow1G6429' => 'sbo', 'SalBow1G6475' => 'sbo', 'SalBow1G8459' => 'sbo', 'SalBow1G8722' => 'sbo', 'SalBow6G0406' => 'sbo', 'SalBow6G1189' => 'sbo', 'SalBow6G1397' => 'sbo', 'SalBow6G1507' => 'sbo', 'SalBow6G1909' => 'sbo', 'SalBow6G2136' => 'sbo', 'SalBow6G2175' => 'sbo', 'SalBow6G2299' => 'sbo', 'SalBow6G4604' => 'sbo', 'SalBow6G5593' => 'sbo', 'SalBow6G5722' => 'sbo', 'SalBow6G5768' => 'sbo', 'SalBow6G5908' => 'sbo', 'SalBow6G6507' => 'sbo', 'SalBow6G6595' => 'sbo', 'SalBow8G3075' => 'sbo', 'Sc25g0005350' => 'sci', 'Sc25g0005360' => 'sci', 'Sed0010379' => 'sed', 'Sed0024968' => 'sed', 'SEGI_10871' => 'sgi', 'SEGI_12496' => 'sgi', 'SEGI_16183' => 'sgi', 'SEGI_34933' => 'sgi', 'SGA_v2.0_scaffold105G30381' => 'sas', 'SGA_v2.0_scaffold105G30387' => 'sas', 'SGA_v2.0_scaffold105G30391' => 'sas', 'SGA_v2.0_scaffold32G13049' => 'sas', 'SGA_v2.0_scaffold32G13050' => 'sas', 'SGA_v2.0_scaffold32G13153' => 'sas', 'SGA_v2.0_scaffold94G28493' => 'sas', 'SGA_v2.0_scaffold96G28939' => 'sas', 'SMO111G0125' => 'smo', 'Solyc03g096200.1' => 'sly', 'Solyc04g008310.3' => 'sly', 'Solyc04g008320.3' => 'sly', 'Solyc04g008330.1' => 'sly', 'Solyc04g014990.3' => 'sly', 'Solyc04g016190.1' => 'sly', 'Solyc04g016200.1' => 'sly', 'Solyc04g016210.4' => 'sly', 'Solyc04g016220.4' => 'sly', 'Solyc04g016230.4' => 'sly', 'Solyc04g026160.3' => 'sly', 'Solyc04g026170.3' => 'sly', 'Solyc05g012670.2' => 'sly', 'Solyc05g053120.1' => 'sly', 'Solyc05g053400.3' => 'sly', 'Solyc06g062290.1' => 'sly', 'Solyc06g062330.3' => 'sly', 'Solyc07g006800.1' => 'sly', 'Solyc07g043440.1' => 'sly', 'Solyc07g043450.3' => 'sly', 'Solyc07g043480.1' => 'sly', 'Solyc10g079320.3' => 'sly', 'Solyc10g079330.2' => 'sly', 'Solyc10g079340.2' => 'sly', 'Solyc10g079350.3' => 'sly', 'Solyc10g079930.1' => 'sly', 'Solyc10g079940.1' => 'sly', 'Solyc10g079950.2' => 'sly', 'Solyc10g079980.1' => 'sly', 'Solyc11g066670.1' => 'sly', 'Solyc11g066680.1' => 'sly', 'Solyc12g009910.1' => 'sly', 'Solyc12g009920.1' => 'sly', 'Solyc12g009930.3' => 'sly', 'Solyc12g009940.2' => 'sly', 'Sopen04g003430' => 'spe', 'Sopen04g003440' => 'spe', 'Sopen04g003450' => 'spe', 'Sopen04g003460' => 'spe', 'Sopen04g003480' => 'spe', 'Sopen04g008240' => 'spe', 'Sopen04g008250' => 'spe', 'Sopen04g008270' => 'spe', 'Sopen04g008280' => 'spe', 'Sopen04g008300' => 'spe', 'Sopen04g008340' => 'spe', 'Sopen05g007500' => 'spe', 'Sopen05g031620' => 'spe', 'Sopen05g031910' => 'spe', 'Sopen06g021510' => 'spe', 'Sopen06g021520' => 'spe', 'Sopen06g021560' => 'spe', 'Sopen07g002900' => 'spe', 'Sopen07g023050' => 'spe', 'Sopen10g029970' => 'spe', 'Sopen10g029980' => 'spe', 'Sopen10g029990' => 'spe', 'Sopen10g030550' => 'spe', 'Sopen10g030560' => 'spe', 'Sopen10g030570' => 'spe', 'Sopen10g030600' => 'spe', 'Sopen11g026400' => 'spe', 'Sopen11g026410' => 'spe', 'Sopen12g004790' => 'spe', 'Sopen12g004800' => 'spe', 'Sopen12g004810' => 'spe', 'Sopen12g004820' => 'spe', 'TAR623G0192' => 'tar', 'TAR623G0317' => 'tar', 'TAR623G0546' => 'tar', 'TAR623G0583' => 'tar', 'TAR623G0646' => 'tar', 'TAR623G0875' => 'tar', 'TAR623G0890' => 'tar', 'TAR623G0983' => 'tar', 'TAR623G1182' => 'tar', 'TAR623G1358' => 'tar', 'TAR623G1563' => 'tar', 'TAR633G0124' => 'tar', 'Thecc.05G150800' => 'tca', 'Thecc.05G150900' => 'tca', 'Thecc.05G151000' => 'tca', 'TPR.G19671' => 'tpr', 'TPR.G19676' => 'tpr', 'TPR.G6215' => 'tpr', 'TWI53G0210' => 'twi', 'TWI74G1370' => 'twi', 'unitig_0.g1206' => 'ugi', 'unitig_22.g6051' => 'ugi', 'unitig_32.g11099' => 'ugi', 'unitig_32.g11100' => 'ugi', 'unitig_37.g12709' => 'ugi', 'unitig_37.g12710' => 'ugi', 'unitig_8.g3500' => 'ugi', 'vmacro09061' => 'vma', 'vmacro09062' => 'vma', 'vmacro09063' => 'vma', 'vmacro09064' => 'vma', 'vmacro09065' => 'vma', 'vmacro09066' => 'vma', 'vmacro21975' => 'vma', 'VMungo0720G1091' => 'vmu', 'VMungo0720G2090' => 'vmu', 'VMungo0720G2366' => 'vmu', 'VMungo0720G2536' => 'vmu', 'VMungo0720G2950' => 'vmu', 'VMungo1383G3067' => 'vmu', 'Zm00001eb074330' => 'zma', 'Zm00001eb074370' => 'zma', 'Zm00001eb085770' => 'zma', 'Zm00001eb110790' => 'zma', 'Zm00001eb367250' => 'zma' ) $gf_id = 'HOM05D000800' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000800' ) $data_identifier = 'HOM05D000800' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 6, 'amhyb' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 2, 'atr' => (int) 8, 'acertr' => (int) 1, 'cqu' => (int) 33, 'can' => (int) 29, 'cansat' => (int) 18, 'car' => (int) 1, 'ccan' => (int) 10, 'cfa' => (int) 1, 'ccl' => (int) 2, 'cil' => (int) 2, 'cla' => (int) 4, 'col' => (int) 1, 'cpa' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 17, 'dca' => (int) 19, 'din' => (int) 6, 'dzi' => (int) 2, 'eca' => (int) 8, 'bvu' => (int) 9, 'egr' => (int) 11, 'fan' => (int) 2, 'fve' => (int) 1, 'gma' => (int) 6, 'ghi' => (int) 2, 'gra' => (int) 1, 'vvi' => (int) 1, 'han' => (int) 15, 'cav' => (int) 2, 'hma' => (int) 8, 'vpl' => (int) 14, 'sun' => (int) 2, 'lal' => (int) 6, 'lonja' => (int) 32, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 2, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 5, 'nta' => (int) 67, 'nnu' => (int) 4, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 43, 'pgr' => (int) 1, 'stu' => (int) 59, 'pvu' => (int) 6, 'ptr' => (int) 3, 'ppe' => (int) 1, 'psa' => (int) 2, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 2, 'rsi' => (int) 14, 'sbr' => (int) 1, 'sbo' => (int) 25, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 4, 'sas' => (int) 8, 'smo' => (int) 1, 'sly' => (int) 35, 'spe' => (int) 32, 'tar' => (int) 12, 'tca' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 2, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb367250' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1